Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2534724 chr12:6583387 C/T 0.000269 178 19.3 25.97 25.42 KM Plot
PCPG rs2564926 chr3:53094730 G/A 6.03E-6 176 11.78 26.05 25.53 KM Plot
PCPG rs2581807 chr3:53088844 G/A 5.82E-6 176 11.78 22.83 25.77 KM Plot
PCPG rs2593823 chr3:108533289 C/A 5.6E-5 174 25.53 20.3 2.93 KM Plot
PCPG rs2603382 chr2:52993247 C/T 0 175 25.4 24.5 3.17 KM Plot
PCPG rs2657407 chr7:158782543 T/C 3.54E-5 172 3.17 24.7 25.77 KM Plot
PCPG rs2669893 chr13:37636740 G/A 0.000354 174 3.55 22.22 26.88 KM Plot
PCPG rs2676610 chr17:3222813 T/C 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs2676612 chr17:3225404 C/T 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs2679046 chr3:81005437 G/A 0.000193 173 25.87 23.53 25.17 KM Plot
PCPG rs2687792 chr3:182468750 A/T 1.47E-7 173 11.78 27.83 25.53 KM Plot
PCPG rs2700852 chr3:182473750 A/G 1.19E-5 174 13.27 25.85 25.53 KM Plot
PCPG rs2700853 chr3:182475939 T/G 1.22E-5 173 13.27 27.2 25.53 KM Plot
PCPG rs27012 chr5:179402211 A/C 0.000251 175 24.1 32.53 14.83 KM Plot
PCPG rs27018 chr5:179405144 A/G 0.000242 176 23.82 32.53 14.83 KM Plot